Variant report
| Variant | rs9409448 |
|---|---|
| Chromosome Location | chr9:94397463-94397464 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZNF263 | chr9:94397202-94397470 | HEK293-T-REx | kidney: | n/a | chr9:94397353-94397374 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR3910-2 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1492685 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1532230 | 0.80[EUR][1000 genomes] |
| rs1873747 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2131303 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62565052 | 0.90[EUR][1000 genomes] |
| rs62565053 | 0.93[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7031240 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7040014 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7852614 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7855529 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9409437 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9409447 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9409619 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9409620 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9409634 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9409635 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9409636 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045332 | chr9:94352661-94656016 | Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047426 | chr9:94363211-94758114 | Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv531631 | chr9:94373847-94633213 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3584916 | chr9:94394246-94403710 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv614858 | chr9:94395522-94403128 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv614859 | chr9:94395522-94403313 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv614860 | chr9:94396059-94399244 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv438109 | chr9:94396059-94400758 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 9 | nsv614861 | chr9:94396059-94403077 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 10 | nsv614862 | chr9:94396059-94403313 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 11 | nsv516473 | chr9:94396059-94405452 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 12 | nsv818713 | chr9:94396059-94406084 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 13 | nsv614863 | chr9:94396676-94398668 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 14 | nsv614864 | chr9:94396676-94403313 | Enhancers | TF binding regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
