Variant report
| Variant | rs7040014 |
|---|---|
| Chromosome Location | chr9:94356507-94356508 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:94354803..94357442-chr9:94359507..94361889,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10992008 | 0.83[AFR][1000 genomes] |
| rs10992015 | 0.83[AFR][1000 genomes] |
| rs1319000 | 0.83[AFR][1000 genomes] |
| rs1492685 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1873747 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2131303 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs55798203 | 0.83[AFR][1000 genomes] |
| rs7022528 | 0.83[AFR][1000 genomes] |
| rs7031240 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7032779 | 0.84[ASN][1000 genomes] |
| rs7033293 | 0.83[AFR][1000 genomes] |
| rs7849723 | 0.83[AFR][1000 genomes] |
| rs7852614 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7855529 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9409437 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9409438 | 0.91[EUR][1000 genomes] |
| rs9409447 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9409448 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9409617 | 0.84[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9409618 | 0.86[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9409619 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9409620 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9409623 | 0.83[AFR][1000 genomes] |
| rs9409634 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9409635 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045332 | chr9:94352661-94656016 | Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:94352000-94365800 | Weak transcription | Pancreas | Pancrea |
