Variant report

Variant	rs9409618
Chromosome Location	chr9:94355737-94355738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94354803..94357442-chr9:94359507..94361889,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10992008	0.88[AFR][1000 genomes]
rs10992015	0.88[AFR][1000 genomes]
rs1319000	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs1492685	0.92[CEU][hapmap];0.89[YRI][hapmap]
rs2131303	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2131304	0.92[CEU][hapmap];0.85[YRI][hapmap]
rs55798203	0.88[AFR][1000 genomes]
rs62565053	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7022528	0.88[AFR][1000 genomes]
rs7027715	0.90[YRI][hapmap]
rs7031240	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7033293	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs7040014	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7041911	0.92[CEU][hapmap];0.95[YRI][hapmap]
rs7849723	0.88[AFR][1000 genomes]
rs7852614	0.92[CEU][hapmap];0.85[YRI][hapmap]
rs7855529	0.92[CEU][hapmap]
rs9409437	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9409438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409443	0.86[YRI][hapmap]
rs9409447	0.92[CEU][hapmap]
rs9409617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409619	0.92[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9409620	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9409623	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs9409634	0.92[CEU][hapmap];0.86[YRI][hapmap]
rs9409635	0.92[CEU][hapmap]
rs9409636	0.92[CEU][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94352000-94365800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links