Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1319000	0.90[YRI][hapmap]
rs1492685	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1532230	0.85[CEU][hapmap]
rs1873747	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2131303	0.83[EUR][1000 genomes]
rs2131304	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs62565052	0.85[EUR][1000 genomes]
rs62565053	0.85[EUR][1000 genomes]
rs7027715	0.90[YRI][hapmap]
rs7031240	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs7032779	0.85[CEU][hapmap]
rs7033293	0.90[YRI][hapmap]
rs7041911	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs7852614	1.00[CEU][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7855529	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9409437	0.82[EUR][1000 genomes]
rs9409438	0.92[CEU][hapmap];0.82[YRI][hapmap]
rs9409443	0.86[YRI][hapmap]
rs9409447	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9409448	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9409617	0.92[CEU][hapmap]
rs9409618	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs9409619	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs9409620	0.83[EUR][1000 genomes]
rs9409623	0.90[YRI][hapmap]
rs9409634	1.00[CEU][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9409635	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94406000-94406800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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