Variant report

Variant	rs62572406
Chromosome Location	chr9:95675771-95675772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10992504	0.82[EUR][1000 genomes]
rs10992511	0.92[AFR][1000 genomes]
rs10992514	0.92[AFR][1000 genomes]
rs10992515	0.92[AFR][1000 genomes]
rs10992528	0.85[AFR][1000 genomes]
rs1853430	0.80[ASN][1000 genomes]
rs41301515	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62572374	0.89[AFR][1000 genomes]
rs62572386	0.92[AFR][1000 genomes]
rs62572407	0.92[AFR][1000 genomes]
rs62572408	0.85[AFR][1000 genomes]
rs7024349	0.82[EUR][1000 genomes]
rs72741018	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1818795	chr9:95656340-95689158	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv982639	chr9:95671744-95685131	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95674400-95675800	Enhancers	Lung	lung
2	chr9:95674400-95679800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:95674600-95679400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:95674800-95675800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:95674800-95687400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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