Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95638865..95641445-chr9:95646989..95649985,2	MCF-7	breast:
2	chr9:95630810..95632810-chr9:95646965..95649484,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127081	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10992511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992528	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1323276	0.92[EUR][1000 genomes]
rs41301515	0.88[AFR][1000 genomes]
rs4595187	0.90[EUR][1000 genomes]
rs62572365	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62572366	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62572367	0.90[EUR][1000 genomes]
rs62572368	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62572369	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62572372	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62572374	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62572381	0.92[EUR][1000 genomes]
rs62572384	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62572406	0.92[AFR][1000 genomes]
rs62572407	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62572408	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62574701	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72741010	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72741018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972781	chr9:95639258-95671744	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95646800-95649000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95647800-95651600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:95648400-95649600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr9:95648400-95651400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:95648400-95651600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr9:95648600-95649600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr9:95648600-95649800	Enhancers	Primary T cells from cord blood	blood
8	chr9:95648600-95650800	Enhancers	Dnd41	blood
9	chr9:95648600-95651000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:95648600-95651400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr9:95648600-95651600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr9:95648800-95650600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr9:95648800-95650600	Enhancers	Thymus	Thymus
14	chr9:95648800-95651400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr9:95648800-95651600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:95648800-95652000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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