Variant report

Variant	rs62572368
Chromosome Location	chr9:95612926-95612927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95611802..95614664-chr9:95945185..95946709,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10992511	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992514	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992515	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992528	0.87[EUR][1000 genomes]
rs1323276	0.95[EUR][1000 genomes]
rs4595187	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62572365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62572366	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62572367	0.96[EUR][1000 genomes]
rs62572369	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62572372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62572374	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62572381	0.95[EUR][1000 genomes]
rs62572384	0.84[EUR][1000 genomes]
rs62572386	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62572407	0.90[EUR][1000 genomes]
rs62572408	0.90[EUR][1000 genomes]
rs62574701	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72741010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741018	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95598000-95616800	ZNF genes & repeats	Liver	Liver
2	chr9:95603400-95616200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:95605000-95624200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:95605600-95613200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr9:95605800-95613400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:95605800-95615600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:95606000-95613400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:95606200-95614000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr9:95606600-95613600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr9:95606800-95619600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:95607400-95613400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr9:95607600-95616200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr9:95607800-95613200	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr9:95607800-95613400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr9:95607800-95614200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:95608000-95613000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
17	chr9:95608000-95613400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
18	chr9:95608000-95614000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:95608200-95614000	ZNF genes & repeats	Ovary	ovary
20	chr9:95608200-95614400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr9:95608200-95614800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:95608200-95616200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:95608200-95616200	ZNF genes & repeats	GM12878-XiMat	blood
24	chr9:95608400-95613800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr9:95608400-95614000	ZNF genes & repeats	Aorta	Aorta
26	chr9:95608600-95616000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
27	chr9:95608800-95613600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr9:95609000-95613600	ZNF genes & repeats	Lung	lung
29	chr9:95609000-95613600	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr9:95609000-95616400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:95609400-95613600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
33	chr9:95610000-95613600	ZNF genes & repeats	Spleen	Spleen
34	chr9:95610200-95614000	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr9:95610400-95613600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr9:95610400-95614000	Strong transcription	Brain Anterior Caudate	brain
37	chr9:95610600-95614000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:95610800-95613000	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr9:95610800-95613200	Weak transcription	Brain Substantia Nigra	brain
40	chr9:95610800-95614000	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr9:95610800-95614200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:95610800-95615000	Weak transcription	HUVEC	blood vessel
43	chr9:95610800-95615000	Weak transcription	K562	blood
44	chr9:95610800-95615200	Weak transcription	Brain Angular Gyrus	brain
45	chr9:95610800-95615200	Weak transcription	Fetal Heart	heart
46	chr9:95610800-95615600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:95610800-95615800	Weak transcription	Stomach Mucosa	stomach
48	chr9:95610800-95617600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:95610800-95619800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr9:95611000-95613200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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