Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10992511	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992514	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992515	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992528	0.84[EUR][1000 genomes]
rs1323276	0.91[EUR][1000 genomes]
rs4595187	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62572365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62572367	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62572368	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62572369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62572372	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62572374	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62572381	0.91[EUR][1000 genomes]
rs62572384	0.81[EUR][1000 genomes]
rs62572386	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62572407	0.86[EUR][1000 genomes]
rs62572408	0.86[EUR][1000 genomes]
rs62574701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72741010	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72741018	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv525363	chr9:95598200-95605067	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95596800-95601800	Weak transcription	Brain Angular Gyrus	brain
2	chr9:95598000-95616800	ZNF genes & repeats	Liver	Liver
3	chr9:95598600-95603200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:95599800-95608400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:95600000-95608400	Weak transcription	Placenta	Placenta
6	chr9:95600000-95610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:95601000-95605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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