Variant report
| Variant | rs72741018 |
|---|---|
| Chromosome Location | chr9:95660388-95660389 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FGD3-2 | chr9:95660214-95660436 | NONHSAT133223 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10992511 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10992514 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10992515 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10992528 | 0.92[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1323276 | 0.92[EUR][1000 genomes] |
| rs41301515 | 0.88[AFR][1000 genomes] |
| rs4595187 | 0.90[EUR][1000 genomes] |
| rs62572365 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62572366 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62572367 | 0.90[EUR][1000 genomes] |
| rs62572368 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62572369 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62572372 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62572374 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62572381 | 0.92[EUR][1000 genomes] |
| rs62572384 | 0.85[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62572386 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62572406 | 0.92[AFR][1000 genomes] |
| rs62572407 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62572408 | 0.92[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62574701 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72741010 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831654 | chr9:95542920-95720961 | ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv893574 | chr9:95580376-95688099 | Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv972781 | chr9:95639258-95671744 | Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | n/a |
| 4 | esv1818795 | chr9:95656340-95689158 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:95653400-95660600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
