Variant report

Variant	rs62575600
Chromosome Location	chr9:100858609-100858610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100857836..100860169-chr9:101016082..101018377,3	K562	blood:
2	chr9:100858445..100860169-chr9:101016082..101018377,2	K562	blood:
3	chr9:100858584..100860538-chr9:100935257..100937803,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17760622	1.00[AFR][1000 genomes]
rs35830621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62575572	1.00[AFR][1000 genomes]
rs62575573	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62575602	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr9:100846000-100862600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:100846200-100862200	Strong transcription	Duodenum Mucosa	Duodenum
4	chr9:100846400-100861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:100847400-100859400	Weak transcription	HepG2	liver
6	chr9:100847400-100869400	Weak transcription	A549	lung
7	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
8	chr9:100850400-100859000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:100850400-100861000	Weak transcription	HMEC	breast
10	chr9:100850400-100868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:100850400-100880400	Weak transcription	HSMM	muscle
12	chr9:100850600-100863000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:100850600-100864400	Weak transcription	Brain Germinal Matrix	brain
14	chr9:100850600-100875400	Weak transcription	NHLF	lung
15	chr9:100850600-100880600	Weak transcription	Fetal Lung	lung
16	chr9:100850800-100859000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:100851000-100862800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:100851400-100859600	Strong transcription	Fetal Intestine Small	intestine
19	chr9:100851400-100861200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:100851600-100859800	Strong transcription	Primary T cells from cord blood	blood
21	chr9:100851800-100860200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:100852000-100859000	Weak transcription	GM12878-XiMat	blood
23	chr9:100852000-100861600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:100852800-100858800	Weak transcription	K562	blood
25	chr9:100853000-100862400	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr9:100853200-100862000	Strong transcription	Dnd41	blood
27	chr9:100853400-100861800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:100853600-100861800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
29	chr9:100854400-100862000	Strong transcription	Fetal Intestine Large	intestine
30	chr9:100854600-100859800	Weak transcription	HSMMtube	muscle
31	chr9:100854600-100860400	Weak transcription	Fetal Brain Female	brain
32	chr9:100854600-100870800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr9:100854800-100859400	Strong transcription	Lung	lung
34	chr9:100854800-100863800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:100854800-100870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:100855000-100862000	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr9:100855000-100864400	Weak transcription	Brain Angular Gyrus	brain
38	chr9:100855000-100866800	Weak transcription	Placenta	Placenta
39	chr9:100855000-100868200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:100855200-100862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:100855200-100864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:100855200-100864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr9:100855400-100860200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:100855400-100860600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr9:100855400-100862000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr9:100855600-100864000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr9:100855600-100864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:100856000-100861000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:100856200-100859600	Strong transcription	Liver	Liver
50	chr9:100856200-100861800	Strong transcription	Spleen	Spleen

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