Variant report

Variant	rs17760622
Chromosome Location	chr9:100754243-100754244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr9:100754199-100754292	GM12878	blood:	n/a	n/a
2	POLR2A	chr9:100754172-100754336	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100683398..100685875-chr9:100753461..100755648,2	MCF-7	breast:
3	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:

Variant related genes	Relation type
ENSG00000236896	TF binding region
ENSG00000136932	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000201830	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56160217	0.94[EUR][1000 genomes]
rs62575561	0.86[EUR][1000 genomes]
rs62575562	0.98[EUR][1000 genomes]
rs62575566	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62575572	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs62575573	1.00[AFR][1000 genomes]
rs62575600	1.00[AFR][1000 genomes]
rs72755419	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100748000-100754600	Weak transcription	Brain Substantia Nigra	brain
2	chr9:100748000-100756800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr9:100748000-100760400	Weak transcription	Fetal Kidney	kidney
4	chr9:100748000-100760800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:100748000-100767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:100748200-100755000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:100748200-100756800	Enhancers	Colon Smooth Muscle	Colon
8	chr9:100748400-100761600	Weak transcription	Brain Anterior Caudate	brain
9	chr9:100748600-100754600	Weak transcription	Colonic Mucosa	Colon
10	chr9:100748600-100755400	Weak transcription	Brain Angular Gyrus	brain
11	chr9:100748600-100757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:100748800-100755000	Enhancers	HepG2	liver
13	chr9:100748800-100755400	Enhancers	A549	lung
14	chr9:100748800-100756200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:100748800-100756200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:100748800-100756600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr9:100748800-100756800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:100749000-100756400	Enhancers	Primary hematopoietic stem cells	blood
19	chr9:100749000-100756800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr9:100749000-100757800	Weak transcription	Fetal Stomach	stomach
21	chr9:100749200-100754400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:100749200-100754600	Weak transcription	Gastric	stomach
23	chr9:100749200-100754800	Enhancers	Primary T cells from cord blood	blood
24	chr9:100749200-100767200	Weak transcription	Esophagus	oesophagus
25	chr9:100749400-100754400	Weak transcription	Fetal Lung	lung
26	chr9:100749400-100754600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:100750000-100755200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr9:100750000-100755400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:100750000-100755600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr9:100750000-100767200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:100750000-100767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:100750200-100756000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:100750400-100755200	Weak transcription	Brain Germinal Matrix	brain
34	chr9:100750400-100755200	Enhancers	Hela-S3	cervix
35	chr9:100750400-100757400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:100750600-100757200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:100750800-100756800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:100750800-100757000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:100750800-100764000	Weak transcription	Fetal Brain Female	brain
40	chr9:100751000-100756400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr9:100751000-100761800	Weak transcription	Right Atrium	heart
42	chr9:100751000-100764200	Weak transcription	Fetal Brain Male	brain
43	chr9:100751000-100765200	Weak transcription	Aorta	Aorta
44	chr9:100751400-100754600	Weak transcription	Fetal Intestine Large	intestine
45	chr9:100751400-100756400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr9:100751400-100756600	Enhancers	Rectal Smooth Muscle	rectum
47	chr9:100751400-100756800	Weak transcription	Fetal Muscle Leg	muscle
48	chr9:100751400-100757600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:100751600-100756200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:100751600-100756200	Enhancers	Sigmoid Colon	Sigmoid Colon

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