Variant report

Variant	rs62575566
Chromosome Location	chr9:100784550-100784551
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100784033..100788653-chr9:100792674..100797277,7	K562	blood:
2	chr9:100774780..100779950-chr9:100780337..100785356,9	K562	blood:

Variant related genes	Relation type
ENSG00000212521	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17760622	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56160217	0.98[EUR][1000 genomes]
rs62575561	0.82[EUR][1000 genomes]
rs62575562	0.94[EUR][1000 genomes]
rs62575572	0.93[AMR][1000 genomes]
rs72755419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100756600-100785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:100757000-100785200	Strong transcription	Placenta	Placenta
3	chr9:100762600-100785400	Strong transcription	Primary T cells from cord blood	blood
4	chr9:100767000-100784600	Strong transcription	Fetal Stomach	stomach
5	chr9:100770600-100788400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:100771600-100784600	Strong transcription	Brain Hippocampus Middle	brain
7	chr9:100773000-100784600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:100773000-100784800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:100773200-100785600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:100773400-100784600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:100776000-100785200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:100776400-100787400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:100778800-100788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:100779000-100784800	Weak transcription	NH-A	brain
15	chr9:100780000-100785200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr9:100780000-100788800	Weak transcription	Fetal Kidney	kidney
17	chr9:100781000-100785000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:100781200-100784800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:100781400-100788200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:100781800-100784600	Strong transcription	Fetal Muscle Leg	muscle
21	chr9:100781800-100785800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:100781800-100786000	Weak transcription	Fetal Brain Female	brain
23	chr9:100781800-100788800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:100781800-100791800	Weak transcription	Hela-S3	cervix
25	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
26	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:100782000-100787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:100782200-100784600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:100782200-100784800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr9:100782200-100785400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:100782200-100787400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:100782200-100788000	Weak transcription	Colonic Mucosa	Colon
34	chr9:100782200-100788600	Weak transcription	K562	blood
35	chr9:100782200-100792400	Weak transcription	Aorta	Aorta
36	chr9:100782200-100794200	Weak transcription	NHDF-Ad	bronchial
37	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:100782200-100796800	Weak transcription	HepG2	liver
39	chr9:100782400-100784600	Weak transcription	Brain Angular Gyrus	brain
40	chr9:100782400-100785000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:100782400-100785000	Weak transcription	Osteobl	bone
42	chr9:100782400-100787200	Weak transcription	Primary B cells from cord blood	blood
43	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:100782800-100785000	Enhancers	Left Ventricle	heart
46	chr9:100782800-100785200	Enhancers	Right Ventricle	heart
47	chr9:100782800-100785800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:100783000-100784600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr9:100783000-100791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:100783200-100784600	Enhancers	Fetal Heart	heart

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