Variant report

Variant	rs62575561
Chromosome Location	chr9:100738266-100738267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17760622	0.86[EUR][1000 genomes]
rs56160217	0.80[EUR][1000 genomes]
rs62575562	0.88[EUR][1000 genomes]
rs62575566	0.82[EUR][1000 genomes]
rs72755419	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100733200-100741400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100734600-100741000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:100734800-100740800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:100734800-100741000	Weak transcription	Fetal Thymus	thymus
5	chr9:100734800-100741000	Weak transcription	Thymus	Thymus
6	chr9:100734800-100741400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:100735800-100744800	Weak transcription	Right Atrium	heart
8	chr9:100736000-100743400	Weak transcription	Dnd41	blood
9	chr9:100738000-100739000	Enhancers	K562	blood
10	chr9:100738200-100742600	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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