Variant report

Variant	rs72755419
Chromosome Location	chr9:100796571-100796572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100684661..100686943-chr9:100794140..100799259,5	K562	blood:
2	chr9:100744061..100747104-chr9:100795931..100798859,4	MCF-7	breast:
3	chr9:100793900..100798932-chr9:100816820..100821233,8	MCF-7	breast:
4	chr9:100796342..100798790-chr9:101837762..101839571,2	K562	blood:
5	chr9:100796501..100799835-chr9:100807798..100809968,3	K562	blood:
6	chr9:100789228..100794108-chr9:100794751..100799924,8	K562	blood:
7	chr9:100685785..100686517-chr9:100796418..100797247,3	MCF-7	breast:
8	chr9:100776438..100779728-chr9:100795602..100798720,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17760622	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56160217	0.98[EUR][1000 genomes]
rs62575561	0.82[EUR][1000 genomes]
rs62575562	0.94[EUR][1000 genomes]
rs62575566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62575572	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
2	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:100782200-100796800	Weak transcription	HepG2	liver
6	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:100783600-100796800	Weak transcription	Liver	Liver
9	chr9:100783600-100796800	Weak transcription	A549	lung
10	chr9:100783600-100797000	Weak transcription	Brain Substantia Nigra	brain
11	chr9:100783800-100797000	Weak transcription	NHEK	skin
12	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:100784200-100796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr9:100784200-100796800	Weak transcription	Gastric	stomach
15	chr9:100784200-100796800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:100784200-100796800	Weak transcription	Dnd41	blood
17	chr9:100784200-100796800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:100784200-100797000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:100784400-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:100784400-100796800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:100784400-100796800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:100784400-100797400	Weak transcription	HSMMtube	muscle
25	chr9:100784600-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:100784600-100796800	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:100784800-100796800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:100785000-100797000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:100785000-100801400	Weak transcription	Fetal Intestine Small	intestine
30	chr9:100785200-100797400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:100785600-100797000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:100789000-100796800	Weak transcription	Pancreas	Pancrea
33	chr9:100789200-100797000	Weak transcription	Thymus	Thymus
34	chr9:100793000-100796600	Weak transcription	Hela-S3	cervix
35	chr9:100794400-100796600	Weak transcription	K562	blood
36	chr9:100794400-100797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:100794400-100797400	Weak transcription	NHLF	lung
38	chr9:100794800-100797000	Weak transcription	NH-A	brain
39	chr9:100795000-100797000	Weak transcription	NHDF-Ad	bronchial
40	chr9:100795200-100797000	Weak transcription	Osteobl	bone
41	chr9:100795400-100797200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:100795600-100800200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:100795800-100796800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:100795800-100796800	Weak transcription	HSMM	muscle
45	chr9:100796000-100797200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:100796200-100796600	Weak transcription	Fetal Thymus	thymus
47	chr9:100796200-100796600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links