Variant report

Variant	rs62575850
Chromosome Location	chr9:104350039-104350040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10512282	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11788114	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11789610	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11790230	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11790832	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11791337	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11793752	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1323432	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16920462	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17188758	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57596144	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59782949	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61051202	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62575815	0.82[AMR][1000 genomes]
rs62575839	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62575842	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62575844	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575845	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62575846	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62575847	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62575848	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62575849	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62575852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62577397	0.87[EUR][1000 genomes]
rs67248872	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104345400-104352000	Weak transcription	A549	lung
2	chr9:104349600-104350200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:104350000-104350600	Enhancers	HSMMtube	muscle

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