Variant report

Variant	rs11791337
Chromosome Location	chr9:104338416-104338417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10512282	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788114	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789610	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11790230	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11790317	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11790832	0.88[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11793752	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11793946	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1323432	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16920443	0.86[EUR][1000 genomes]
rs16920462	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17188758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57596144	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59782949	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61051202	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61396182	0.86[EUR][1000 genomes]
rs61685305	0.86[EUR][1000 genomes]
rs62575808	0.81[EUR][1000 genomes]
rs62575815	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62575836	0.84[AFR][1000 genomes]
rs62575837	0.84[AFR][1000 genomes]
rs62575839	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575842	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62575844	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62575845	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62575846	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62575847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62575848	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62575849	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62575850	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62575851	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62575852	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62577397	0.81[EUR][1000 genomes]
rs66786600	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67248872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045287	1.00[MEX][hapmap];0.95[TSI][hapmap]
rs72745305	0.84[AFR][1000 genomes]
rs7859863	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104325200-104344400	Weak transcription	NHLF	lung
2	chr9:104325200-104350000	Weak transcription	HSMMtube	muscle
3	chr9:104327000-104344600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:104327400-104339600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:104327400-104348400	Weak transcription	Aorta	Aorta
6	chr9:104327600-104344400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:104327800-104344400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:104328000-104342200	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:104328400-104340600	Weak transcription	GM12878-XiMat	blood
10	chr9:104329000-104338800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:104330200-104338600	Weak transcription	Colonic Mucosa	Colon
12	chr9:104331800-104344600	Weak transcription	HSMM	muscle
13	chr9:104332400-104338800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:104332400-104344600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:104332800-104340600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:104333000-104340600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:104333000-104342200	Weak transcription	Spleen	Spleen
18	chr9:104333000-104342400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:104333000-104344400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:104333000-104344400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:104333000-104344800	Weak transcription	A549	lung
22	chr9:104333400-104340000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr9:104333400-104340600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:104333400-104340800	Weak transcription	Primary B cells from cord blood	blood
25	chr9:104333400-104342400	Weak transcription	Fetal Stomach	stomach
26	chr9:104335200-104340600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:104335200-104344600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:104335400-104340600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:104335400-104344600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:104335400-104344800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr9:104335600-104340400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:104335600-104340600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:104335600-104340800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:104335600-104344400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:104335600-104344600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:104335600-104346000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:104335800-104340800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr9:104335800-104340800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:104336000-104340600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr9:104336200-104338800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:104336600-104340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:104337800-104339200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr9:104337800-104339800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:104337800-104340600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:104337800-104340600	Weak transcription	Fetal Brain Male	brain
46	chr9:104338200-104344400	Weak transcription	Fetal Brain Female	brain
47	chr9:104338400-104338600	Enhancers	Gastric	stomach
48	chr9:104338400-104338800	Enhancers	Muscle Satellite Cultured Cells	--

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