Variant report

Variant	rs72745305
Chromosome Location	chr9:104288748-104288749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104288484..104290134-chr9:104298816..104300608,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10512282	0.84[AFR][1000 genomes]
rs11788114	0.90[AFR][1000 genomes]
rs11790230	0.81[AFR][1000 genomes]
rs11791337	0.84[AFR][1000 genomes]
rs11793946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920437	0.81[ASN][1000 genomes]
rs16920441	0.81[ASN][1000 genomes]
rs16920462	0.97[AFR][1000 genomes]
rs16920477	1.00[ASN][1000 genomes]
rs16920487	0.88[ASN][1000 genomes]
rs16920497	0.88[ASN][1000 genomes]
rs16920501	0.88[ASN][1000 genomes]
rs17188758	0.84[AFR][1000 genomes]
rs1929483	0.81[ASN][1000 genomes]
rs2417270	0.81[ASN][1000 genomes]
rs2417271	0.81[ASN][1000 genomes]
rs28411396	1.00[ASN][1000 genomes]
rs3813523	0.81[ASN][1000 genomes]
rs41282149	0.84[ASN][1000 genomes]
rs41282153	0.84[ASN][1000 genomes]
rs41282155	0.88[ASN][1000 genomes]
rs45587135	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56998622	0.81[ASN][1000 genomes]
rs59782949	0.97[AFR][1000 genomes]
rs61051202	0.93[AFR][1000 genomes]
rs62000403	0.85[ASN][1000 genomes]
rs62575836	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575837	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575839	0.97[AFR][1000 genomes]
rs67248872	0.84[AFR][1000 genomes]
rs7859863	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7872953	1.00[ASN][1000 genomes]
rs7873986	0.88[ASN][1000 genomes]
rs989900	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893627	chr9:104268342-104334333	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104286800-104295200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:104286800-104295200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:104287200-104295200	Weak transcription	Adipose Nuclei	Adipose
4	chr9:104287600-104290800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links