Variant report

Variant	rs16920462
Chromosome Location	chr9:104287520-104287521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10512282	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11788114	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11789610	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11790230	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11790317	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11790832	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11791337	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11793752	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11793946	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs1323432	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16920443	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17188758	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35681249	0.88[EUR][1000 genomes]
rs57596144	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59782949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61051202	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61396182	0.96[EUR][1000 genomes]
rs61685305	0.96[EUR][1000 genomes]
rs62575808	0.90[EUR][1000 genomes]
rs62575815	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62575836	0.97[AFR][1000 genomes]
rs62575837	0.97[AFR][1000 genomes]
rs62575839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62575842	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62575844	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575845	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62575846	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575847	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575848	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62575849	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62575850	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62575851	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62575852	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62577397	0.84[EUR][1000 genomes]
rs66786600	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67248872	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7045287	1.00[CEU][hapmap]
rs72745305	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893627	chr9:104268342-104334333	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104286800-104287800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:104286800-104295200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:104286800-104295200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:104287200-104295200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:104287400-104287600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain

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