Variant report

Variant	rs62575837
Chromosome Location	chr9:104294356-104294357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104208004..104209865-chr9:104292464..104295242,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10512282	0.84[AFR][1000 genomes]
rs11788114	0.90[AFR][1000 genomes]
rs11790230	0.81[AFR][1000 genomes]
rs11791337	0.84[AFR][1000 genomes]
rs11793946	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920437	0.81[ASN][1000 genomes]
rs16920441	0.81[ASN][1000 genomes]
rs16920462	0.97[AFR][1000 genomes]
rs16920477	1.00[ASN][1000 genomes]
rs16920487	0.88[ASN][1000 genomes]
rs16920497	0.88[ASN][1000 genomes]
rs16920501	0.88[ASN][1000 genomes]
rs17188758	0.84[AFR][1000 genomes]
rs1929483	0.81[ASN][1000 genomes]
rs2417270	0.81[ASN][1000 genomes]
rs2417271	0.81[ASN][1000 genomes]
rs28411396	1.00[ASN][1000 genomes]
rs3813523	0.81[ASN][1000 genomes]
rs41282149	0.84[ASN][1000 genomes]
rs41282153	0.84[ASN][1000 genomes]
rs41282155	0.88[ASN][1000 genomes]
rs45587135	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56998622	0.81[ASN][1000 genomes]
rs59782949	0.97[AFR][1000 genomes]
rs61051202	0.93[AFR][1000 genomes]
rs62000403	0.85[ASN][1000 genomes]
rs62575836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575839	0.97[AFR][1000 genomes]
rs67248872	0.84[AFR][1000 genomes]
rs72745305	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859863	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7872953	1.00[ASN][1000 genomes]
rs7873986	0.88[ASN][1000 genomes]
rs989900	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893627	chr9:104268342-104334333	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104286800-104295200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:104286800-104295200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:104287200-104295200	Weak transcription	Adipose Nuclei	Adipose
4	chr9:104289600-104295200	Weak transcription	Brain Anterior Caudate	brain
5	chr9:104289800-104295400	Weak transcription	NHEK	skin
6	chr9:104290200-104295400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:104290800-104295200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:104291000-104295400	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:104291400-104295200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:104291400-104295200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:104291400-104295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:104291600-104295800	Weak transcription	Small Intestine	intestine
13	chr9:104292400-104295200	Weak transcription	Fetal Heart	heart
14	chr9:104292400-104295400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:104292600-104295200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:104292600-104295200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:104292600-104295200	Weak transcription	Stomach Mucosa	stomach
18	chr9:104292800-104295200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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