Variant report

Variant	rs62578024
Chromosome Location	chr9:118027057-118027058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2989505	0.87[EUR][1000 genomes]
rs58073362	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62578008	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62578021	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578022	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578032	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7034885	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72762380	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764241	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7853844	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118023000-118029000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:118023000-118029000	Enhancers	HMEC	breast
3	chr9:118023000-118029200	Enhancers	NHDF-Ad	bronchial
4	chr9:118023400-118029400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:118023400-118029400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118023600-118028800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:118023600-118029200	Enhancers	Colon Smooth Muscle	Colon
8	chr9:118023600-118029200	Enhancers	Osteobl	bone
9	chr9:118023600-118029400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:118023600-118029400	Enhancers	NHLF	lung
11	chr9:118023800-118029000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:118024000-118029000	Enhancers	Fetal Stomach	stomach
13	chr9:118024000-118029400	Enhancers	Fetal Lung	lung
14	chr9:118024600-118028200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:118025200-118027800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:118025200-118028000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:118025200-118028000	Weak transcription	HSMMtube	muscle
18	chr9:118025200-118028400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:118026200-118029200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:118026600-118028000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:118026600-118028000	Weak transcription	NH-A	brain
22	chr9:118026800-118027800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:118026800-118027800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:118027000-118028000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:118027000-118028000	Weak transcription	NHEK	skin

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