Variant report

Variant	rs62578032
Chromosome Location	chr9:118043057-118043058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2989505	0.86[EUR][1000 genomes]
rs58073362	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62578008	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62578021	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62578022	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62578024	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7034885	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72762380	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72764241	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7853844	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118038600-118044200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:118041000-118045200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:118041200-118045000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:118041200-118045000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:118042200-118043600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:118042800-118043200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:118042800-118043600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:118042800-118052800	Weak transcription	Gastric	stomach
9	chr9:118043000-118043200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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