Variant report

Variant	rs7853844
Chromosome Location	chr9:118050414-118050415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16932390	1.00[CHB][hapmap]
rs2989505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs58073362	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62578008	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62578021	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62578022	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62578024	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62578032	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7034885	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72762380	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72764241	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Pancreatic cancer	23180869	GWAS catalog

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118042800-118052800	Weak transcription	Gastric	stomach
2	chr9:118044200-118051800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:118047600-118052800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:118048600-118054000	Weak transcription	HSMM	muscle
5	chr9:118049000-118053800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118049200-118052200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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