Variant report

Variant	rs62622817
Chromosome Location	chr17:38785042-38785043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38783257..38785685-chr17:38788764..38791698,3	K562	blood:
2	chr17:38784899..38787837-chr17:38802175..38804338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073584	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73293412	1.00[AMR][1000 genomes]
rs73293417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38773000-38786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:38774400-38786200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:38774400-38789200	Weak transcription	Right Atrium	heart
4	chr17:38776600-38787000	Weak transcription	Aorta	Aorta
5	chr17:38776600-38787800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr17:38776600-38788400	Weak transcription	Fetal Brain Male	brain
7	chr17:38776600-38788400	Weak transcription	Fetal Intestine Small	intestine
8	chr17:38776800-38786200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr17:38778400-38786000	Weak transcription	Fetal Lung	lung
10	chr17:38779000-38786600	Weak transcription	Colon Smooth Muscle	Colon
11	chr17:38779000-38787000	Weak transcription	Fetal Stomach	stomach
12	chr17:38779000-38789000	Weak transcription	Small Intestine	intestine
13	chr17:38779200-38788800	Weak transcription	Fetal Heart	heart
14	chr17:38779600-38786200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:38779800-38785800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:38779800-38786600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:38780800-38785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr17:38781200-38791600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr17:38781400-38786200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr17:38781600-38786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:38781800-38793600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr17:38782000-38786800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr17:38782200-38785800	Weak transcription	Right Ventricle	heart
24	chr17:38782400-38786000	Weak transcription	K562	blood
25	chr17:38782600-38801000	Strong transcription	Primary B cells from cord blood	blood
26	chr17:38783000-38785800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr17:38783000-38794000	Strong transcription	Fetal Brain Female	brain
28	chr17:38783000-38800200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr17:38783000-38802400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr17:38783200-38787400	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr17:38783200-38794200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:38783200-38794400	Strong transcription	NH-A	brain
33	chr17:38783200-38794600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr17:38783200-38799200	Strong transcription	Fetal Muscle Leg	muscle
35	chr17:38783200-38800600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr17:38783200-38800800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr17:38783200-38800800	Strong transcription	GM12878-XiMat	blood
38	chr17:38783200-38801400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr17:38783200-38801400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr17:38783200-38801400	Strong transcription	A549	lung
41	chr17:38783200-38801600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr17:38783200-38801800	Strong transcription	Fetal Thymus	thymus
43	chr17:38783200-38801800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr17:38783400-38789800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr17:38783400-38794400	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr17:38783400-38794800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr17:38783400-38800400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr17:38783400-38800600	Strong transcription	Primary T cells from cord blood	blood
49	chr17:38783400-38801400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr17:38783400-38801400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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