Variant report

Variant	rs73293417
Chromosome Location	chr17:38707406-38707407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38702522..38704504-chr17:38705149..38707900,2	MCF-7	breast:
2	chr17:38706854..38708675-chr17:38781959..38784830,2	MCF-7	breast:
3	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
4	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
5	chr17:38706823..38713094-chr17:38713465..38718695,10	K562	blood:
6	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
7	chr17:38705923..38708848-chr17:38793584..38795694,2	K562	blood:
8	chr17:38704352..38709633-chr17:38730788..38735534,10	MCF-7	breast:
9	chr17:38705642..38709928-chr17:38772338..38775854,5	MCF-7	breast:
10	chr17:38598113..38601965-chr17:38705104..38709206,8	MCF-7	breast:
11	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
12	chr17:38705731..38708080-chr17:39693080..39694676,2	MCF-7	breast:
13	chr17:38689023..38690777-chr17:38705235..38707470,2	MCF-7	breast:
14	chr17:38703124..38707421-chr17:38736644..38740073,5	MCF-7	breast:
15	chr12:52583438..52585132-chr17:38705740..38708246,2	MCF-7	breast:
16	chr17:38481232..38483242-chr17:38705290..38708203,2	MCF-7	breast:
17	chr11:9482141..9483789-chr17:38705846..38708351,2	MCF-7	breast:
18	chr17:38706452..38708820-chr17:39844155..39847106,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000126353	Chromatin interaction
ENSG00000073584	Chromatin interaction

rs_ID	r²[population]
rs59946710	0.89[AFR][1000 genomes]
rs62622817	1.00[AMR][1000 genomes]
rs73293404	0.89[AFR][1000 genomes]
rs73293412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293418	0.94[AFR][1000 genomes]
rs73293423	0.94[AFR][1000 genomes]
rs73310938	0.89[AFR][1000 genomes]
rs73310948	0.83[AFR][1000 genomes]
rs73310954	0.89[AFR][1000 genomes]
rs73310959	0.89[AFR][1000 genomes]
rs73310968	0.89[AFR][1000 genomes]
rs73310969	0.89[AFR][1000 genomes]
rs8080769	0.89[AFR][1000 genomes]
rs8080778	0.89[AFR][1000 genomes]

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38698000-38708400	Enhancers	Fetal Thymus	thymus
2	chr17:38698200-38708200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr17:38699600-38707800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:38701400-38708000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr17:38701400-38708000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:38701600-38709000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:38702000-38709200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:38702000-38710200	Weak transcription	Gastric	stomach
11	chr17:38702200-38710000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:38702400-38710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:38703000-38708400	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:38703000-38708800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:38703000-38709200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:38703000-38709600	Enhancers	Primary B cells from cord blood	blood
17	chr17:38703200-38714400	Enhancers	Lung	lung
18	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
19	chr17:38703400-38708400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr17:38703400-38711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr17:38703400-38711200	Enhancers	Fetal Stomach	stomach
22	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
23	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
24	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
25	chr17:38703600-38707800	Enhancers	NHDF-Ad	bronchial
26	chr17:38703600-38708000	Enhancers	Rectal Smooth Muscle	rectum
27	chr17:38703600-38708400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr17:38703600-38708800	Enhancers	Spleen	Spleen
29	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr17:38703600-38717200	Enhancers	Placenta	Placenta
31	chr17:38703800-38709600	Enhancers	Adipose Nuclei	Adipose
32	chr17:38703800-38710200	Enhancers	Right Atrium	heart
33	chr17:38703800-38710200	Enhancers	NHLF	lung
34	chr17:38703800-38711000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:38703800-38711600	Enhancers	Colon Smooth Muscle	Colon
36	chr17:38704000-38708200	Flanking Active TSS	A549	lung
37	chr17:38704200-38707600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr17:38704200-38707600	Weak transcription	Brain Germinal Matrix	brain
39	chr17:38704200-38707600	Weak transcription	Fetal Brain Female	brain
40	chr17:38704200-38707800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr17:38704200-38707800	Weak transcription	Fetal Brain Male	brain
42	chr17:38704200-38708400	Weak transcription	Brain Substantia Nigra	brain
43	chr17:38704200-38709000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr17:38704200-38709000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr17:38704200-38709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:38704200-38709600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr17:38704200-38709800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr17:38704200-38713000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr17:38704200-38713200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr17:38704400-38707800	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links