Variant report

Variant	rs73293423
Chromosome Location	chr17:38710421-38710422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
2	chr17:38706823..38713094-chr17:38713465..38718695,10	K562	blood:
3	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
4	chr17:38690730..38692899-chr17:38709121..38712377,3	K562	blood:
5	chr17:38473690..38475489-chr17:38708570..38711777,4	MCF-7	breast:
6	chr17:38707503..38711120-chr17:38769935..38775644,8	MCF-7	breast:
7	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
8	chr17:38687442..38690186-chr17:38709464..38712029,2	K562	blood:
9	chr17:38543498..38545581-chr17:38709876..38712151,2	MCF-7	breast:
10	chr17:38690730..38694650-chr17:38709121..38712377,6	K562	blood:
11	chr17:38599314..38601066-chr17:38708764..38710479,2	K562	blood:
12	chr17:38518803..38520429-chr17:38710279..38712720,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000183153	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000126353	Chromatin interaction

rs_ID	r²[population]
rs59946710	0.94[AFR][1000 genomes]
rs73293404	0.94[AFR][1000 genomes]
rs73293412	0.94[AFR][1000 genomes]
rs73293417	0.94[AFR][1000 genomes]
rs73293418	1.00[AFR][1000 genomes]
rs73310938	0.94[AFR][1000 genomes]
rs73310948	0.88[AFR][1000 genomes]
rs73310954	0.94[AFR][1000 genomes]
rs73310959	0.94[AFR][1000 genomes]
rs73310968	0.94[AFR][1000 genomes]
rs73310969	0.94[AFR][1000 genomes]
rs8080769	0.94[AFR][1000 genomes]
rs8080778	0.94[AFR][1000 genomes]

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38703200-38714400	Enhancers	Lung	lung
2	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
3	chr17:38703400-38711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:38703400-38711200	Enhancers	Fetal Stomach	stomach
5	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
6	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
7	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
8	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:38703600-38717200	Enhancers	Placenta	Placenta
10	chr17:38703800-38711000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:38703800-38711600	Enhancers	Colon Smooth Muscle	Colon
12	chr17:38704200-38713000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr17:38704200-38713200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr17:38704600-38711200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr17:38705000-38711000	Enhancers	Fetal Lung	lung
16	chr17:38705000-38711200	Enhancers	Colonic Mucosa	Colon
17	chr17:38705200-38712000	Enhancers	Ovary	ovary
18	chr17:38706400-38711600	Enhancers	Fetal Heart	heart
19	chr17:38706800-38711000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr17:38708000-38711200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr17:38708000-38711600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr17:38708400-38711000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr17:38708400-38712000	Enhancers	Right Ventricle	heart
24	chr17:38708400-38716200	Genic enhancers	Primary B cells from peripheral blood	blood
25	chr17:38708400-38716400	Genic enhancers	Fetal Thymus	thymus
26	chr17:38708800-38710800	Enhancers	Liver	Liver
27	chr17:38708800-38711200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr17:38708800-38711400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:38708800-38712600	Weak transcription	HUVEC	blood vessel
30	chr17:38708800-38713800	Weak transcription	Psoas Muscle	Psoas
31	chr17:38709000-38710600	Enhancers	Small Intestine	intestine
32	chr17:38709000-38711000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr17:38709000-38711000	Enhancers	NH-A	brain
34	chr17:38709000-38711800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr17:38709000-38717200	Enhancers	NHDF-Ad	bronchial
36	chr17:38709000-38718200	Enhancers	Primary hematopoietic stem cells	blood
37	chr17:38709200-38711000	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr17:38709200-38711200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr17:38709200-38711800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr17:38709400-38710800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr17:38709400-38710800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr17:38709400-38711000	Enhancers	Fetal Intestine Large	intestine
43	chr17:38709400-38711800	Genic enhancers	Spleen	Spleen
44	chr17:38709400-38716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr17:38709600-38710600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr17:38709600-38710600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr17:38709600-38710600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:38709600-38710600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr17:38709600-38710600	Flanking Active TSS	HepG2	liver
50	chr17:38709600-38710800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links