Variant report

Variant	rs73310938
Chromosome Location	chr17:38658459-38658460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38597908..38601053-chr17:38654458..38659532,5	MCF-7	breast:
2	chr17:38657942..38660738-chr17:38672354..38674383,2	K562	blood:
3	chr17:38636036..38638375-chr17:38656645..38659245,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266088	Chromatin interaction
ENSG00000131746	Chromatin interaction
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59946710	1.00[AFR][1000 genomes]
rs73293404	1.00[AFR][1000 genomes]
rs73293412	0.89[AFR][1000 genomes]
rs73293417	0.89[AFR][1000 genomes]
rs73293418	0.94[AFR][1000 genomes]
rs73293423	0.94[AFR][1000 genomes]
rs73310948	0.94[AFR][1000 genomes]
rs73310954	1.00[AFR][1000 genomes]
rs73310959	1.00[AFR][1000 genomes]
rs73310968	1.00[AFR][1000 genomes]
rs73310969	1.00[AFR][1000 genomes]
rs8080769	1.00[AFR][1000 genomes]
rs8080778	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38656600-38658600	Enhancers	Stomach Mucosa	stomach
2	chr17:38656600-38662600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:38656600-38666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:38656600-38668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:38656800-38666000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr17:38656800-38668400	Weak transcription	Gastric	stomach
7	chr17:38657000-38666000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr17:38657000-38666000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr17:38658000-38658600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr17:38658000-38658600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr17:38658000-38658800	Enhancers	Placenta	Placenta
12	chr17:38658000-38659000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr17:38658200-38658600	Enhancers	A549	lung
14	chr17:38658200-38658600	Enhancers	HMEC	breast
15	chr17:38658200-38659000	Enhancers	Hela-S3	cervix
16	chr17:38658400-38659400	Enhancers	NHEK	skin
17	chr17:38658400-38662400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:38658400-38662600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr17:38658400-38662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:38658400-38665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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