The 2.0 version of rSNPBase

Variant report

Variant rs59946710
Chromosome Location chr17:38694695-38694696
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38684200-38697000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
2 chr17:38686400-38698200 Enhancers Breast Myoepithelial Primary Cells Breast
3 chr17:38686600-38697200 Enhancers Fetal Thymus thymus
4 chr17:38687000-38696600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr17:38687400-38698800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr17:38688800-38699000 Enhancers Primary Natural Killer cells fromperipheralblood blood
7 chr17:38688800-38700200 Enhancers Fetal Heart heart
8 chr17:38689800-38696200 Weak transcription Fetal Intestine Large intestine
9 chr17:38690000-38698400 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr17:38690400-38695600 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr17:38691200-38698800 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr17:38691800-38696000 Enhancers Primary T helper naive cells from peripheral blood blood
13 chr17:38691800-38696400 Enhancers Primary T killer memory cells from peripheral blood blood
14 chr17:38691800-38700200 Enhancers Dnd41 blood
15 chr17:38692000-38695800 Enhancers Colon Smooth Muscle Colon
16 chr17:38692000-38697000 Enhancers Primary T cells from cord blood blood
17 chr17:38692000-38697000 Enhancers Primary T helper cells fromperipheralblood blood
18 chr17:38692000-38698200 Enhancers Adipose Nuclei Adipose
19 chr17:38692000-38700200 Enhancers Left Ventricle heart
20 chr17:38692000-38700200 Enhancers Skeletal Muscle Female skeletal muscle
21 chr17:38692000-38700600 Enhancers Fetal Stomach stomach
22 chr17:38692200-38695600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr17:38692200-38695600 Enhancers NHDF-Ad bronchial
24 chr17:38692200-38696600 Enhancers Primary T helper naive cells fromperipheralblood blood
25 chr17:38692200-38696800 Enhancers Primary T cells fromperipheralblood blood
26 chr17:38692200-38696800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
27 chr17:38692200-38697800 Enhancers Duodenum Smooth Muscle Duodenum
28 chr17:38692200-38698400 Enhancers A549 lung
29 chr17:38692200-38700600 Enhancers Placenta Placenta
30 chr17:38692200-38700600 Enhancers HepG2 liver
31 chr17:38692400-38694800 Enhancers Primary B cells from cord blood blood
32 chr17:38692400-38694800 Enhancers Brain Anterior Caudate brain
33 chr17:38692400-38695800 Enhancers Primary T helper 17 cells PMA-I stimulated --
34 chr17:38692400-38696400 Enhancers Primary T helper cells PMA-I stimulated --
35 chr17:38692400-38696800 Enhancers Primary T killer naive cells fromperipheralblood blood
36 chr17:38692400-38700000 Enhancers Lung lung
37 chr17:38692400-38700200 Enhancers HMEC breast
38 chr17:38692600-38695200 Enhancers Cortex derived primary cultured neurospheres brain
39 chr17:38692600-38697200 Enhancers Thymus Thymus
40 chr17:38692600-38697200 Enhancers GM12878-XiMat blood
41 chr17:38692600-38701000 Enhancers Fetal Muscle Leg muscle
42 chr17:38692800-38695200 Enhancers Brain Inferior Temporal Lobe brain
43 chr17:38692800-38696600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr17:38692800-38700000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr17:38692800-38700800 Enhancers Liver Liver
46 chr17:38693000-38695600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr17:38693000-38698200 Weak transcription Fetal Brain Female brain
48 chr17:38693200-38696400 Weak transcription Brain Germinal Matrix brain
49 chr17:38693200-38696600 Weak transcription Colonic Mucosa Colon
50 chr17:38693200-38697400 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015