Variant report

Variant	rs73293412
Chromosome Location	chr17:38703657-38703658
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38673009..38676029-chr17:38703569..38707305,5	MCF-7	breast:
2	chr17:38702522..38704504-chr17:38705149..38707900,2	MCF-7	breast:
3	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
4	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
5	chr17:38696903..38699108-chr17:38700807..38704169,3	MCF-7	breast:
6	chr17:38703368..38705067-chr17:38713048..38715001,2	K562	blood:
7	chr17:38518849..38521739-chr17:38702520..38705372,3	MCF-7	breast:
8	chr17:38597417..38600075-chr17:38700629..38704119,3	MCF-7	breast:
9	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:
10	chr17:38703124..38707421-chr17:38736644..38740073,5	MCF-7	breast:
11	chr17:38703286..38705686-chr17:39683987..39687588,4	MCF-7	breast:
12	chr17:38653701..38656623-chr17:38703547..38705327,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000266088	Chromatin interaction
ENSG00000171345	Chromatin interaction
ENSG00000183153	Chromatin interaction

rs_ID	r²[population]
rs59946710	0.89[AFR][1000 genomes]
rs62622817	1.00[AMR][1000 genomes]
rs73293404	0.89[AFR][1000 genomes]
rs73293417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293418	0.94[AFR][1000 genomes]
rs73293423	0.94[AFR][1000 genomes]
rs73310938	0.89[AFR][1000 genomes]
rs73310948	0.83[AFR][1000 genomes]
rs73310954	0.89[AFR][1000 genomes]
rs73310959	0.89[AFR][1000 genomes]
rs73310968	0.89[AFR][1000 genomes]
rs73310969	0.89[AFR][1000 genomes]
rs8080769	0.89[AFR][1000 genomes]
rs8080778	0.89[AFR][1000 genomes]

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38698000-38708400	Enhancers	Fetal Thymus	thymus
2	chr17:38698200-38708200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:38698400-38704800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:38699200-38703800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:38699400-38703800	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr17:38699600-38703800	Weak transcription	Brain Substantia Nigra	brain
8	chr17:38699600-38704800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr17:38699600-38707800	Weak transcription	Brain Angular Gyrus	brain
10	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr17:38699800-38703800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:38699800-38703800	Weak transcription	Stomach Mucosa	stomach
13	chr17:38699800-38704000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr17:38699800-38704000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr17:38699800-38704800	Weak transcription	Fetal Intestine Large	intestine
16	chr17:38699800-38705000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr17:38699800-38705000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr17:38699800-38705000	Weak transcription	Brain Anterior Caudate	brain
19	chr17:38700000-38703800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr17:38700000-38703800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr17:38700000-38703800	Weak transcription	NH-A	brain
22	chr17:38700000-38704000	Weak transcription	Fetal Intestine Small	intestine
23	chr17:38700000-38704000	Weak transcription	Small Intestine	intestine
24	chr17:38700000-38705000	Weak transcription	Colonic Mucosa	Colon
25	chr17:38700000-38705000	Weak transcription	Osteobl	bone
26	chr17:38700200-38703800	Weak transcription	Adipose Nuclei	Adipose
27	chr17:38700200-38703800	Weak transcription	Colon Smooth Muscle	Colon
28	chr17:38700200-38703800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr17:38700200-38703800	Weak transcription	Pancreas	Pancrea
30	chr17:38700200-38703800	Weak transcription	Right Atrium	heart
31	chr17:38700200-38703800	Weak transcription	NHLF	lung
32	chr17:38700200-38704000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr17:38700200-38704800	Weak transcription	Psoas Muscle	Psoas
34	chr17:38700200-38705000	Weak transcription	Fetal Lung	lung
35	chr17:38700400-38705200	Weak transcription	Ovary	ovary
36	chr17:38701400-38703800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr17:38701400-38708000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr17:38701400-38708000	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr17:38701600-38704000	Enhancers	A549	lung
40	chr17:38701600-38709000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr17:38702000-38709200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr17:38702000-38710200	Weak transcription	Gastric	stomach
43	chr17:38702200-38710000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr17:38702400-38703800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr17:38702400-38710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:38703000-38708400	Enhancers	Primary B cells from peripheral blood	blood
47	chr17:38703000-38708800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr17:38703000-38709200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr17:38703000-38709600	Enhancers	Primary B cells from cord blood	blood
50	chr17:38703200-38704000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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