Variant report

Variant	rs73310969
Chromosome Location	chr17:38690611-38690612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38689023..38690777-chr17:38705235..38707470,2	MCF-7	breast:
2	chr17:38690592..38691168-chr17:38711466..38712330,2	MCF-7	breast:
3	chr17:38655284..38659044-chr17:38686692..38691600,6	MCF-7	breast:
4	chr17:38689594..38690625-chr17:38716259..38717126,3	MCF-7	breast:
5	chr17:38603691..38606464-chr17:38689047..38691053,2	MCF-7	breast:
6	chr17:38572042..38574329-chr17:38688910..38690957,2	MCF-7	breast:
7	chr17:38514941..38517306-chr17:38689354..38691130,2	K562	blood:
8	chr17:38597471..38599668-chr17:38689776..38691457,2	K562	blood:
9	chr17:38567583..38575027-chr17:38687434..38693796,7	K562	blood:
10	chr17:38595245..38602220-chr17:38686762..38692136,14	MCF-7	breast:
11	chr17:38615426..38618640-chr17:38688722..38692627,3	MCF-7	breast:
12	chr17:38690144..38691765-chr17:38711279..38713760,2	MCF-7	breast:
13	chr17:38597490..38601746-chr17:38686793..38692185,8	MCF-7	breast:
14	chr17:38514587..38516570-chr17:38688574..38692395,3	K562	blood:
15	chr17:38688685..38691278-chr17:38771780..38774213,2	MCF-7	breast:
16	chr17:38690528..38691104-chr17:38732243..38732780,2	MCF-7	breast:
17	chr17:38690562..38691104-chr17:38732280..38732871,2	MCF-7	breast:
18	chr17:38519019..38521573-chr17:38688348..38691250,5	K562	blood:
19	chr17:38686790..38691109-chr17:38691407..38694438,4	K562	blood:
20	chr17:38690536..38691393-chr17:38732030..38732929,2	MCF-7	breast:
21	chr17:38519019..38522951-chr17:38688553..38692204,5	K562	blood:
22	chr17:38689494..38692182-chr17:38712855..38714426,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000240125	Chromatin interaction
ENSG00000131746	Chromatin interaction
ENSG00000266208	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000183153	Chromatin interaction
ENSG00000131747	Chromatin interaction

rs_ID	r²[population]
rs59946710	1.00[AFR][1000 genomes]
rs73293404	1.00[AFR][1000 genomes]
rs73293412	0.89[AFR][1000 genomes]
rs73293417	0.89[AFR][1000 genomes]
rs73293418	0.94[AFR][1000 genomes]
rs73293423	0.94[AFR][1000 genomes]
rs73310938	1.00[AFR][1000 genomes]
rs73310948	0.94[AFR][1000 genomes]
rs73310954	1.00[AFR][1000 genomes]
rs73310959	1.00[AFR][1000 genomes]
rs73310968	1.00[AFR][1000 genomes]
rs8080769	1.00[AFR][1000 genomes]
rs8080778	1.00[AFR][1000 genomes]

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38683800-38691000	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr17:38683800-38691200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr17:38684200-38691200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr17:38684200-38691200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr17:38684200-38691400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr17:38684200-38697000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:38685200-38691400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:38686400-38691200	Enhancers	Primary B cells from peripheral blood	blood
9	chr17:38686400-38691200	Enhancers	Osteobl	bone
10	chr17:38686400-38698200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr17:38686600-38691200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:38686600-38692600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:38686600-38697200	Enhancers	Fetal Thymus	thymus
14	chr17:38686800-38691000	Enhancers	Thymus	Thymus
15	chr17:38686800-38691200	Enhancers	Primary B cells from cord blood	blood
16	chr17:38687000-38692800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr17:38687000-38696600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr17:38687200-38690800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr17:38687200-38691200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr17:38687400-38698800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr17:38687800-38691000	Enhancers	Adipose Nuclei	Adipose
22	chr17:38687800-38691200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr17:38688000-38691400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr17:38688000-38692600	Weak transcription	Small Intestine	intestine
25	chr17:38688200-38692200	Weak transcription	Esophagus	oesophagus
26	chr17:38688200-38692200	Weak transcription	Right Ventricle	heart
27	chr17:38688200-38692600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr17:38688400-38691000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr17:38688400-38691200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr17:38688600-38690800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr17:38688600-38690800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr17:38688600-38690800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr17:38688600-38691000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr17:38688600-38691000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr17:38688600-38691000	Enhancers	NHLF	lung
36	chr17:38688600-38691200	Enhancers	NHDF-Ad	bronchial
37	chr17:38688800-38690800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr17:38688800-38691000	Enhancers	Spleen	Spleen
39	chr17:38688800-38699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr17:38688800-38700200	Enhancers	Fetal Heart	heart
41	chr17:38689000-38690800	Enhancers	Primary hematopoietic stem cells	blood
42	chr17:38689000-38690800	Enhancers	Fetal Stomach	stomach
43	chr17:38689200-38691000	Enhancers	Placenta	Placenta
44	chr17:38689200-38691000	Enhancers	Left Ventricle	heart
45	chr17:38689400-38690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr17:38689400-38690800	Enhancers	Liver	Liver
47	chr17:38689400-38691000	Enhancers	Right Atrium	heart
48	chr17:38689800-38690800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr17:38689800-38691000	Enhancers	Lung	lung
50	chr17:38689800-38691200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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