Variant report

Variant	rs73293404
Chromosome Location	chr17:38696041-38696042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
2	chr17:38695930..38697741-chr17:38731286..38734229,2	MCF-7	breast:
3	chr17:38690637..38694364-chr17:38695614..38697593,5	K562	blood:
4	chr17:38694801..38698136-chr17:38699360..38701896,3	K562	blood:
5	chr17:38596291..38600592-chr17:38695103..38698831,4	MCF-7	breast:
6	chr17:38690637..38692842-chr17:38695894..38697593,2	K562	blood:
7	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction

rs_ID	r²[population]
rs59946710	1.00[AFR][1000 genomes]
rs73293412	0.89[AFR][1000 genomes]
rs73293417	0.89[AFR][1000 genomes]
rs73293418	0.94[AFR][1000 genomes]
rs73293423	0.94[AFR][1000 genomes]
rs73310938	1.00[AFR][1000 genomes]
rs73310948	0.94[AFR][1000 genomes]
rs73310954	1.00[AFR][1000 genomes]
rs73310959	1.00[AFR][1000 genomes]
rs73310968	1.00[AFR][1000 genomes]
rs73310969	1.00[AFR][1000 genomes]
rs8080769	1.00[AFR][1000 genomes]
rs8080778	1.00[AFR][1000 genomes]

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38684200-38697000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:38686400-38698200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr17:38686600-38697200	Enhancers	Fetal Thymus	thymus
4	chr17:38687000-38696600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr17:38687400-38698800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:38688800-38699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:38688800-38700200	Enhancers	Fetal Heart	heart
8	chr17:38689800-38696200	Weak transcription	Fetal Intestine Large	intestine
9	chr17:38690000-38698400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:38691200-38698800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:38691800-38696400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr17:38691800-38700200	Enhancers	Dnd41	blood
13	chr17:38692000-38697000	Enhancers	Primary T cells from cord blood	blood
14	chr17:38692000-38697000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr17:38692000-38698200	Enhancers	Adipose Nuclei	Adipose
16	chr17:38692000-38700200	Enhancers	Left Ventricle	heart
17	chr17:38692000-38700200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr17:38692000-38700600	Enhancers	Fetal Stomach	stomach
19	chr17:38692200-38696600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr17:38692200-38696800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr17:38692200-38696800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:38692200-38697800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr17:38692200-38698400	Enhancers	A549	lung
24	chr17:38692200-38700600	Enhancers	Placenta	Placenta
25	chr17:38692200-38700600	Enhancers	HepG2	liver
26	chr17:38692400-38696400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr17:38692400-38696800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr17:38692400-38700000	Enhancers	Lung	lung
29	chr17:38692400-38700200	Enhancers	HMEC	breast
30	chr17:38692600-38697200	Enhancers	Thymus	Thymus
31	chr17:38692600-38697200	Enhancers	GM12878-XiMat	blood
32	chr17:38692600-38701000	Enhancers	Fetal Muscle Leg	muscle
33	chr17:38692800-38696600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr17:38692800-38700000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr17:38692800-38700800	Enhancers	Liver	Liver
36	chr17:38693000-38698200	Weak transcription	Fetal Brain Female	brain
37	chr17:38693200-38696400	Weak transcription	Brain Germinal Matrix	brain
38	chr17:38693200-38696600	Weak transcription	Colonic Mucosa	Colon
39	chr17:38693200-38697400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr17:38693200-38698200	Enhancers	K562	blood
41	chr17:38693200-38700600	Enhancers	Fetal Muscle Trunk	muscle
42	chr17:38693400-38696600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr17:38693400-38697000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr17:38693400-38697000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr17:38693400-38697200	Weak transcription	Fetal Lung	lung
46	chr17:38693400-38697400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr17:38693400-38697400	Weak transcription	Small Intestine	intestine
48	chr17:38693400-38697600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr17:38693400-38698200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:38693400-38698200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links