Variant report

Variant	rs73310954
Chromosome Location	chr17:38674928-38674929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38604010..38606679-chr17:38673420..38675786,2	MCF-7	breast:
2	chr17:38654640..38659414-chr17:38673768..38679140,6	MCF-7	breast:
3	chr17:38472782..38476711-chr17:38671565..38675024,4	MCF-7	breast:
4	chr17:38673323..38675272-chr17:38683066..38684839,2	K562	blood:
5	chr17:38674427..38676783-chr17:38681653..38684502,2	MCF-7	breast:
6	chr17:38646147..38648547-chr17:38673997..38676989,2	MCF-7	breast:
7	chr17:38673127..38676333-chr17:38678075..38682047,4	K562	blood:
8	chr17:38674420..38677033-chr17:38703871..38705481,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131746	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000266088	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59946710	1.00[AFR][1000 genomes]
rs73293404	1.00[AFR][1000 genomes]
rs73293412	0.89[AFR][1000 genomes]
rs73293417	0.89[AFR][1000 genomes]
rs73293418	0.94[AFR][1000 genomes]
rs73293423	0.94[AFR][1000 genomes]
rs73310938	1.00[AFR][1000 genomes]
rs73310948	0.94[AFR][1000 genomes]
rs73310959	1.00[AFR][1000 genomes]
rs73310968	1.00[AFR][1000 genomes]
rs73310969	1.00[AFR][1000 genomes]
rs8080769	1.00[AFR][1000 genomes]
rs8080778	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38666800-38675000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:38666800-38677400	Weak transcription	Right Atrium	heart
3	chr17:38668200-38677400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr17:38668400-38680600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:38668600-38675200	Weak transcription	Gastric	stomach
6	chr17:38671400-38675400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr17:38671400-38679800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:38671600-38679400	Enhancers	Placenta	Placenta
9	chr17:38672200-38679200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr17:38672600-38675000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr17:38672600-38675200	Enhancers	Osteobl	bone
12	chr17:38672600-38675600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr17:38672600-38680800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr17:38672800-38679200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr17:38673000-38676000	Enhancers	NH-A	brain
16	chr17:38673200-38676000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:38673400-38676000	Enhancers	K562	blood
18	chr17:38673600-38675000	Weak transcription	NHDF-Ad	bronchial
19	chr17:38673600-38675200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr17:38673600-38675400	Enhancers	HSMM	muscle
21	chr17:38673600-38675600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr17:38673600-38675600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr17:38673600-38675800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr17:38673600-38676200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr17:38673600-38676200	Enhancers	Fetal Thymus	thymus
26	chr17:38673600-38676200	Enhancers	HepG2	liver
27	chr17:38673600-38676600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr17:38673600-38677000	Weak transcription	HSMMtube	muscle
29	chr17:38673600-38677400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr17:38673600-38678200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr17:38673800-38675800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr17:38673800-38676000	Enhancers	Primary B cells from peripheral blood	blood
33	chr17:38673800-38677000	Weak transcription	Spleen	Spleen
34	chr17:38673800-38678200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr17:38674000-38676200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr17:38674000-38676600	Enhancers	Primary T cells from cord blood	blood
37	chr17:38674000-38676600	Enhancers	Dnd41	blood
38	chr17:38674000-38679200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr17:38674200-38675000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr17:38674200-38675000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr17:38674200-38675200	Enhancers	Colonic Mucosa	Colon
42	chr17:38674200-38675400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr17:38674200-38675400	Enhancers	Duodenum Mucosa	Duodenum
44	chr17:38674200-38675800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr17:38674200-38675800	Enhancers	Stomach Mucosa	stomach
46	chr17:38674200-38676000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr17:38674200-38676000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:38674200-38676200	Enhancers	Esophagus	oesophagus
49	chr17:38674200-38681200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr17:38674400-38675000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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