Variant report

Variant	rs627542
Chromosome Location	chr8:60872828-60872829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12676407	0.91[EUR][1000 genomes]
rs1497041	0.89[EUR][1000 genomes]
rs16925454	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1955227	0.91[EUR][1000 genomes]
rs4607595	0.85[EUR][1000 genomes]
rs4738787	0.88[EUR][1000 genomes]
rs527166	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56203327	0.81[EUR][1000 genomes]
rs58546633	0.86[EUR][1000 genomes]
rs601224	0.92[EUR][1000 genomes]
rs61514252	0.86[EUR][1000 genomes]
rs62510024	0.85[EUR][1000 genomes]
rs6471845	0.89[EUR][1000 genomes]
rs674292	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6984918	0.88[EUR][1000 genomes]
rs6985045	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6996720	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7001936	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60871600-60884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60872000-60873200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:60872400-60873000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:60872600-60873600	Enhancers	GM12878-XiMat	blood
5	chr8:60872600-60874800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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