Variant report

Variant	rs634500
Chromosome Location	chr7:103391409-103391410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103308135..103310700-chr7:103389205..103391721,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10247465	0.84[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap]
rs10265101	0.82[CEU][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap]
rs473940	0.82[EUR][1000 genomes]
rs477444	0.80[EUR][1000 genomes]
rs491263	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs505394	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507226	0.81[GIH][hapmap]
rs512529	0.82[EUR][1000 genomes]
rs517761	0.86[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap]
rs525692	0.81[EUR][1000 genomes]
rs528528	0.81[EUR][1000 genomes]
rs531330	0.81[EUR][1000 genomes]
rs539327	0.90[JPT][hapmap]
rs554350	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs562393	0.80[EUR][1000 genomes]
rs562444	0.82[EUR][1000 genomes]
rs607755	0.87[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs620774	0.81[EUR][1000 genomes]
rs621311	0.80[EUR][1000 genomes]
rs622657	0.80[EUR][1000 genomes]
rs626065	0.85[JPT][hapmap]
rs635245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs637577	0.82[EUR][1000 genomes]
rs637606	0.82[EUR][1000 genomes]
rs649310	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651097	0.87[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs683390	0.80[EUR][1000 genomes]
rs722613	0.84[CEU][hapmap]
rs916603	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs995450	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv524101	chr7:103391042-103391409	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103390000-103434000	Weak transcription	K562	blood
2	chr7:103391000-103393400	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links