Variant report
| Variant | rs6427521 |
|---|---|
| Chromosome Location | chr1:160496177-160496178 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10797069 | 0.80[AMR][1000 genomes] |
| rs10797072 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10797076 | 0.84[ASN][1000 genomes] |
| rs11265432 | 0.84[ASN][1000 genomes] |
| rs1324734 | 0.82[ASN][1000 genomes] |
| rs3845627 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3898642 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3903887 | 0.80[ASN][1000 genomes] |
| rs3903888 | 0.80[ASN][1000 genomes] |
| rs3904694 | 0.80[ASN][1000 genomes] |
| rs4268352 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs56850015 | 0.80[ASN][1000 genomes] |
| rs6413899 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6427523 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6427525 | 0.84[ASN][1000 genomes] |
| rs6662885 | 0.80[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6680709 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6689237 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6691593 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6696595 | 0.84[ASN][1000 genomes] |
| rs6700440 | 0.80[ASN][1000 genomes] |
| rs6700764 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7519809 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7547372 | 0.80[ASN][1000 genomes] |
| rs7555581 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1829614 | chr1:160465291-160595000 | Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv872491 | chr1:160470258-160580549 | Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv831703 | chr1:160496124-160643024 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:160494600-160498800 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
