Variant report

Variant	rs7519809
Chromosome Location	chr1:160482650-160482651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10797069	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10797072	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10797076	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10797077	0.85[ASN][1000 genomes]
rs10797078	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10908782	0.82[AMR][1000 genomes]
rs10908787	0.81[AMR][1000 genomes]
rs10908788	0.81[AMR][1000 genomes]
rs11265418	0.85[AMR][1000 genomes]
rs11265432	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11265433	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11265436	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11265438	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1149381	0.83[EUR][1000 genomes]
rs12128290	0.82[AMR][1000 genomes]
rs1324734	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1466933	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1503856	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1503859	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1553458	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1590450	0.83[EUR][1000 genomes]
rs2050523	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2134705	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2369721	0.81[AMR][1000 genomes]
rs2369723	0.83[EUR][1000 genomes]
rs2438181	0.81[EUR][1000 genomes]
rs349250	0.83[EUR][1000 genomes]
rs349251	0.83[EUR][1000 genomes]
rs3737788	0.81[ASN][1000 genomes]
rs3737789	0.85[ASN][1000 genomes]
rs3766390	0.85[ASN][1000 genomes]
rs3845627	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3898642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903887	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903888	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3904694	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145896	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4268352	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6413899	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6427521	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6427523	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6427525	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6427530	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6659814	0.83[EUR][1000 genomes]
rs6662885	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6668881	0.83[EUR][1000 genomes]
rs6680709	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680920	0.83[EUR][1000 genomes]
rs6689237	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691593	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6696595	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6700440	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700764	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724985	0.83[EUR][1000 genomes]
rs7413789	0.83[EUR][1000 genomes]
rs7519913	0.81[EUR][1000 genomes]
rs7533828	0.82[AMR][1000 genomes]
rs7535796	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7543788	0.83[EUR][1000 genomes]
rs7547372	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7555581	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160473800-160485800	Weak transcription	Thymus	Thymus
2	chr1:160481000-160483000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr1:160481400-160484200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:160481400-160484800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:160481600-160484000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:160481800-160483400	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr1:160482000-160482800	Strong transcription	Primary T cells from cord blood	blood
8	chr1:160482200-160483200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:160482200-160483600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:160482200-160484000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:160482200-160489200	Weak transcription	Fetal Thymus	thymus
12	chr1:160482400-160482800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:160482400-160483000	Enhancers	HepG2	liver
14	chr1:160482400-160483600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr1:160482400-160485200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:160482400-160485600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:160482600-160482800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:160482600-160483000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr1:160482600-160484000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:160482600-160484800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:160482600-160489200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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