Variant report

Variant	rs7533828
Chromosome Location	chr1:160484161-160484162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10797069	0.82[AMR][1000 genomes]
rs10797076	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10797077	0.83[EUR][1000 genomes]
rs10908782	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265418	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265432	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1138322	0.81[EUR][1000 genomes]
rs1503860	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1503861	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3737789	0.82[EUR][1000 genomes]
rs3766390	0.82[EUR][1000 genomes]
rs3845627	0.81[AMR][1000 genomes]
rs3898642	0.82[AMR][1000 genomes]
rs4268352	0.82[AMR][1000 genomes]
rs6427522	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427524	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427525	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6427528	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6691593	0.82[AMR][1000 genomes]
rs6696595	0.81[AMR][1000 genomes]
rs6700440	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6700764	0.82[AMR][1000 genomes]
rs7519809	0.82[AMR][1000 genomes]
rs7547372	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160473800-160485800	Weak transcription	Thymus	Thymus
2	chr1:160481400-160484200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:160481400-160484800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:160482200-160489200	Weak transcription	Fetal Thymus	thymus
5	chr1:160482400-160485200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:160482400-160485600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:160482600-160484800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:160482600-160489200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:160482800-160488800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:160483000-160484600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:160483600-160485000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr1:160483600-160489000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:160483800-160484600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:160484000-160484200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:160484000-160484600	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr1:160484000-160484600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr1:160484000-160484800	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr1:160484000-160489200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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