Variant report

Variant	rs10797069
Chromosome Location	chr1:160474013-160474014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:160473840-160474030	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000223009	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10797072	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10797076	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10797077	0.83[ASN][1000 genomes]
rs10797078	0.81[AMR][1000 genomes]
rs10908782	0.82[AMR][1000 genomes]
rs11265418	0.82[AMR][1000 genomes]
rs11265432	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11265433	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11265436	0.81[AMR][1000 genomes]
rs11265438	0.81[AMR][1000 genomes]
rs1324734	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1466933	0.81[AMR][1000 genomes]
rs1503856	0.81[AMR][1000 genomes]
rs1503859	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1553458	0.81[AMR][1000 genomes]
rs2050523	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2134705	0.81[AMR][1000 genomes]
rs3737789	0.83[ASN][1000 genomes]
rs3766390	0.83[ASN][1000 genomes]
rs3845627	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3898642	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903887	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903888	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3904694	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145896	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4268352	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6413899	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6427521	0.80[AMR][1000 genomes]
rs6427523	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6427525	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6427530	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6662885	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6680709	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6689237	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691593	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6696595	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6700440	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6700764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7519809	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7533828	0.82[AMR][1000 genomes]
rs7535796	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7547372	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7555581	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160466200-160474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:160468000-160477000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr1:160470800-160475400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:160471200-160475200	Weak transcription	Placenta	Placenta
5	chr1:160471400-160474600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:160471600-160474200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:160471600-160474600	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr1:160471600-160474600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:160471800-160474600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:160472000-160475200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:160472400-160474200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:160472800-160474600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:160472800-160474800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:160472800-160474800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr1:160473000-160474200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:160473200-160474800	Enhancers	Stomach Mucosa	stomach
17	chr1:160473400-160474400	Enhancers	Primary T cells from cord blood	blood
18	chr1:160473400-160475000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:160473800-160475200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr1:160473800-160475200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:160473800-160475600	Strong transcription	Primary B cells from cord blood	blood
22	chr1:160473800-160485800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links