Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:160475481-160477561	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000223009	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10797069	0.82[AMR][1000 genomes]
rs10797076	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10797077	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10908782	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265432	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1138322	0.81[EUR][1000 genomes]
rs1503860	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1503861	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3737788	0.81[AMR][1000 genomes]
rs3737789	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766390	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3845627	0.84[AMR][1000 genomes]
rs3898642	0.85[AMR][1000 genomes]
rs4268352	0.85[AMR][1000 genomes]
rs6427522	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427524	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427525	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6427528	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6662885	0.82[AMR][1000 genomes]
rs6680709	0.82[AMR][1000 genomes]
rs6696595	0.83[AMR][1000 genomes]
rs6700440	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6700764	0.82[AMR][1000 genomes]
rs7519809	0.85[AMR][1000 genomes]
rs7533828	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547372	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160473800-160485800	Weak transcription	Thymus	Thymus
2	chr1:160474600-160480000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:160475200-160477800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
4	chr1:160475400-160477400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
5	chr1:160475600-160477800	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr1:160475800-160477800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr1:160475800-160477800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
8	chr1:160476600-160481000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:160476800-160477600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr1:160476800-160480000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:160477200-160477400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood

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