The 2.0 version of rSNPBase

Variant report

Variant rs6429154
Chromosome Location chr1:239877266-239877267
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:239845000-239879800 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr1:239861200-239878000 Weak transcription Fetal Intestine Small intestine
3 chr1:239867400-239879000 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr1:239867800-239879000 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:239868600-239878200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:239868800-239880400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:239869000-239880800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr1:239870200-239882400 Weak transcription Pancreas Pancrea
9 chr1:239870200-239883000 Weak transcription Fetal Brain Male brain
10 chr1:239870200-239883000 Weak transcription Gastric stomach
11 chr1:239870800-239878200 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr1:239871600-239880600 Weak transcription Thymus Thymus
13 chr1:239872000-239879000 Weak transcription Primary hematopoietic stem cells blood
14 chr1:239872000-239879000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:239872600-239878200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr1:239874000-239878000 Genic enhancers Primary T helper naive cells fromperipheralblood blood
17 chr1:239874200-239878000 Strong transcription Primary T cells from cord blood blood
18 chr1:239874400-239877400 Strong transcription Dnd41 blood
19 chr1:239875000-239877800 Genic enhancers Primary T helper cells PMA-I stimulated --
20 chr1:239875200-239879000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:239875400-239890800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:239875600-239880000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr1:239875800-239877400 Weak transcription Fetal Thymus thymus
24 chr1:239876000-239878800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:239876200-239878000 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:239876400-239877400 Strong transcription Primary T helper cells fromperipheralblood blood
27 chr1:239876800-239877800 Weak transcription Stomach Mucosa stomach
28 chr1:239876800-239880200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr1:239877000-239880000 Weak transcription Primary T cells fromperipheralblood blood
30 chr1:239877000-239880800 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015