Variant report

Variant	rs6435257
Chromosome Location	chr2:205752062-205752063
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57961408	1.00[AFR][1000 genomes]
rs58415117	0.91[AFR][1000 genomes]
rs61315722	1.00[AFR][1000 genomes]
rs6715583	1.00[AFR][1000 genomes]
rs6718742	0.91[AFR][1000 genomes]
rs73982557	0.91[AFR][1000 genomes]
rs73982559	1.00[AFR][1000 genomes]
rs73982591	1.00[AFR][1000 genomes]
rs73982592	1.00[AFR][1000 genomes]
rs73982593	1.00[AFR][1000 genomes]
rs73982595	1.00[AFR][1000 genomes]
rs73982602	1.00[AFR][1000 genomes]
rs73984404	1.00[AFR][1000 genomes]
rs7574812	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205744800-205752400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:205745400-205752400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:205746800-205757000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:205747400-205752400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:205747600-205752200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:205747600-205759600	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:205751200-205752200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:205751200-205752400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:205751200-205752400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:205751200-205752400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:205751600-205752400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr2:205751600-205754000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:205752000-205752800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:205752000-205754000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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