Variant report

Variant	rs73982602
Chromosome Location	chr2:205757351-205757352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205754789..205757751-chr2:205758546..205761529,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57961408	1.00[AFR][1000 genomes]
rs58415117	0.91[AFR][1000 genomes]
rs61315722	1.00[AFR][1000 genomes]
rs6435257	1.00[AFR][1000 genomes]
rs6715583	1.00[AFR][1000 genomes]
rs6718742	0.91[AFR][1000 genomes]
rs73982557	0.91[AFR][1000 genomes]
rs73982559	1.00[AFR][1000 genomes]
rs73982591	1.00[AFR][1000 genomes]
rs73982592	1.00[AFR][1000 genomes]
rs73982593	1.00[AFR][1000 genomes]
rs73982595	1.00[AFR][1000 genomes]
rs73984404	1.00[AFR][1000 genomes]
rs7574812	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205747600-205759600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:205752600-205770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:205754200-205757400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:205754600-205761400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:205756800-205758000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:205756800-205758000	Enhancers	NHLF	lung
7	chr2:205756800-205758200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:205756800-205758400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:205756800-205759000	Enhancers	NHDF-Ad	bronchial
10	chr2:205756800-205759400	Enhancers	Primary T cells from cord blood	blood
11	chr2:205756800-205760000	Enhancers	HSMM	muscle
12	chr2:205757000-205758200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:205757000-205758200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr2:205757000-205758200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:205757000-205758200	Enhancers	Osteobl	bone
16	chr2:205757000-205758400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr2:205757000-205759400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr2:205757000-205760000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:205757200-205757400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:205757200-205757800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr2:205757200-205758400	Enhancers	NHEK	skin
22	chr2:205757200-205758600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:205757200-205760000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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