Variant report

Variant	rs6718742
Chromosome Location	chr2:205716274-205716275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs41454345	0.84[AFR][1000 genomes]
rs55885667	0.84[AFR][1000 genomes]
rs55900334	0.84[AFR][1000 genomes]
rs56034781	0.84[AFR][1000 genomes]
rs57961408	0.91[AFR][1000 genomes]
rs57973835	0.84[AFR][1000 genomes]
rs58058037	0.84[AFR][1000 genomes]
rs58415117	1.00[AFR][1000 genomes]
rs60803761	0.84[AFR][1000 genomes]
rs61315722	0.91[AFR][1000 genomes]
rs6435257	0.91[AFR][1000 genomes]
rs6715583	0.91[AFR][1000 genomes]
rs73982553	0.82[AFR][1000 genomes]
rs73982557	1.00[AFR][1000 genomes]
rs73982559	0.91[AFR][1000 genomes]
rs73982591	0.91[AFR][1000 genomes]
rs73982592	0.91[AFR][1000 genomes]
rs73982593	0.91[AFR][1000 genomes]
rs73982595	0.91[AFR][1000 genomes]
rs73982602	0.91[AFR][1000 genomes]
rs73984285	0.84[AFR][1000 genomes]
rs73984404	0.91[AFR][1000 genomes]
rs73986205	0.84[AFR][1000 genomes]
rs73986206	0.81[AFR][1000 genomes]
rs73986207	0.84[AFR][1000 genomes]
rs7574812	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875724	chr2:205572718-205727222	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205708400-205718000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:205715600-205717800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:205716200-205717200	Weak transcription	Fetal Stomach	stomach
4	chr2:205716200-205718000	Weak transcription	Fetal Lung	lung
5	chr2:205716200-205718200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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