Variant report
| Variant | rs6437608 |
|---|---|
| Chromosome Location | chr3:94777000-94777001 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:94776805..94778652-chr3:94799142..94801105,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1039646 | 0.85[AMR][1000 genomes] |
| rs11915767 | 1.00[CEU][hapmap] |
| rs11919076 | 0.85[AMR][1000 genomes] |
| rs11927923 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs16853213 | 0.89[EUR][1000 genomes] |
| rs34490494 | 0.84[EUR][1000 genomes] |
| rs4407407 | 0.85[AMR][1000 genomes] |
| rs56767894 | 0.85[AMR][1000 genomes] |
| rs60964852 | 0.85[AMR][1000 genomes] |
| rs6779933 | 0.82[AMR][1000 genomes] |
| rs73172320 | 0.85[AMR][1000 genomes] |
| rs7625700 | 1.00[CEU][hapmap] |
| rs9821870 | 0.82[AMR][1000 genomes] |
| rs9836994 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9839723 | 0.85[AMR][1000 genomes] |
| rs9867698 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877169 | chr3:94675697-94840854 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv590993 | chr3:94759504-94841342 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1012191 | chr3:94769139-94854973 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv536652 | chr3:94769139-94854973 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:94774400-94777200 | Weak transcription | Fetal Heart | heart |
