Variant report

Variant	rs6438014
Chromosome Location	chr3:111517048-111517049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:55698433..55700361-chr3:111514654..111517522,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12491977	0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12635594	0.82[ASN][1000 genomes]
rs13072118	0.81[ASN][1000 genomes]
rs6438013	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6767371	0.98[EUR][1000 genomes]
rs7621055	0.80[ASN][1000 genomes]
rs9840340	0.81[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111501600-111518800	Weak transcription	A549	lung
4	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:111509400-111518800	Weak transcription	HepG2	liver
7	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
8	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
9	chr3:111512200-111517600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:111513200-111521000	Weak transcription	Lung	lung
11	chr3:111513800-111521000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:111514400-111518800	Weak transcription	Liver	Liver
13	chr3:111514600-111521000	Weak transcription	Fetal Stomach	stomach
14	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:111514800-111518800	Weak transcription	Pancreas	Pancrea
16	chr3:111515800-111520000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:111516000-111519400	Weak transcription	Osteobl	bone
18	chr3:111516000-111519600	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:111516400-111519000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:111516600-111519800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:111516800-111519000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:111516800-111519400	Weak transcription	Fetal Lung	lung
23	chr3:111517000-111518800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:111517000-111519000	Weak transcription	Adipose Nuclei	Adipose
25	chr3:111517000-111519400	Weak transcription	NHDF-Ad	bronchial

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