Variant report

Variant	rs13072118
Chromosome Location	chr3:111514607-111514608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111510278..111513205-chr3:111513379..111515141,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12635594	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56400016	0.92[ASN][1000 genomes]
rs6438013	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438014	0.81[ASN][1000 genomes]
rs9811721	0.93[EUR][1000 genomes]
rs9840340	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111501600-111518800	Weak transcription	A549	lung
4	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:111504200-111515400	Weak transcription	Adipose Nuclei	Adipose
6	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:111507600-111515400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:111509400-111518800	Weak transcription	HepG2	liver
9	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
10	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
11	chr3:111512200-111517600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:111513200-111517000	Enhancers	NHDF-Ad	bronchial
13	chr3:111513200-111521000	Weak transcription	Lung	lung
14	chr3:111513400-111517000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:111513600-111514800	Strong transcription	Pancreas	Pancrea
16	chr3:111513800-111521000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:111514000-111515800	Weak transcription	Fetal Lung	lung
18	chr3:111514400-111515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:111514400-111518800	Weak transcription	Liver	Liver
20	chr3:111514600-111521000	Weak transcription	Fetal Stomach	stomach
21	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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