Variant report

Variant	rs6438013
Chromosome Location	chr3:111513720-111513721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111510278..111513205-chr3:111513379..111515141,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12635594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13072118	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56400016	0.92[ASN][1000 genomes]
rs6438014	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9811721	0.92[CEU][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs9840340	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9857303	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111501600-111518800	Weak transcription	A549	lung
5	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111504200-111515400	Weak transcription	Adipose Nuclei	Adipose
7	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:111507600-111515400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:111509400-111518800	Weak transcription	HepG2	liver
10	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
11	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
12	chr3:111512200-111517600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:111512800-111513800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:111513000-111514600	Enhancers	Fetal Stomach	stomach
15	chr3:111513200-111517000	Enhancers	NHDF-Ad	bronchial
16	chr3:111513200-111521000	Weak transcription	Lung	lung
17	chr3:111513400-111514200	Enhancers	Fetal Kidney	kidney
18	chr3:111513400-111514400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:111513400-111517000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111513600-111513800	Enhancers	Fetal Lung	lung
21	chr3:111513600-111514400	Strong transcription	Liver	Liver
22	chr3:111513600-111514800	Strong transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links