Variant report

Variant	rs9811721
Chromosome Location	chr3:111521268-111521269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12635594	0.95[EUR][1000 genomes]
rs13072118	0.93[EUR][1000 genomes]
rs6438013	0.92[CEU][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs9840340	0.92[CEU][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
3	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:111518800-111522000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:111518800-111522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:111518800-111522200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:111518800-111522400	Enhancers	Liver	Liver
8	chr3:111518800-111523200	Enhancers	HMEC	breast
9	chr3:111518800-111523600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:111519000-111521600	Enhancers	Hela-S3	cervix
11	chr3:111519000-111522800	Enhancers	Adipose Nuclei	Adipose
12	chr3:111519000-111523400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:111519200-111522200	Weak transcription	Esophagus	oesophagus
14	chr3:111519200-111523200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:111519200-111526200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:111519200-111526400	Weak transcription	Pancreas	Pancrea
17	chr3:111519400-111522200	Enhancers	Osteobl	bone
18	chr3:111519400-111522400	Enhancers	Fetal Lung	lung
19	chr3:111519600-111522400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:111519800-111523400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:111520000-111523000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:111520000-111523200	Enhancers	NHLF	lung
23	chr3:111520000-111525800	Weak transcription	Fetal Intestine Large	intestine
24	chr3:111520200-111522200	Weak transcription	Right Atrium	heart
25	chr3:111520600-111521800	Enhancers	Fetal Kidney	kidney
26	chr3:111520600-111522600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr3:111520600-111522800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:111520600-111522800	Flanking Active TSS	A549	lung
29	chr3:111520600-111523000	Enhancers	NH-A	brain
30	chr3:111520800-111521400	Enhancers	HUVEC	blood vessel
31	chr3:111520800-111521800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:111520800-111522400	Enhancers	Placenta	Placenta
33	chr3:111520800-111523000	Enhancers	Rectal Smooth Muscle	rectum
34	chr3:111520800-111523000	Enhancers	HSMMtube	muscle
35	chr3:111521000-111521400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:111521000-111521400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr3:111521000-111521600	Enhancers	Ovary	ovary
38	chr3:111521000-111521600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr3:111521000-111521800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:111521000-111521800	Enhancers	Stomach Mucosa	stomach
41	chr3:111521000-111521800	Flanking Active TSS	NHEK	skin
42	chr3:111521000-111522200	Enhancers	Colon Smooth Muscle	Colon
43	chr3:111521000-111522600	Enhancers	Fetal Heart	heart
44	chr3:111521000-111522600	Enhancers	Fetal Stomach	stomach
45	chr3:111521000-111522600	Enhancers	Stomach Smooth Muscle	stomach
46	chr3:111521000-111526400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:111521200-111521400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:111521200-111521400	Weak transcription	Gastric	stomach
49	chr3:111521200-111521400	Enhancers	NHDF-Ad	bronchial
50	chr3:111521200-111521600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links