Variant report

Variant	rs6439505
Chromosome Location	chr3:134365753-134365754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10804633	1.00[AMR][1000 genomes]
rs10935122	1.00[AMR][1000 genomes]
rs12632372	1.00[AMR][1000 genomes]
rs4396934	1.00[AMR][1000 genomes]
rs4440162	1.00[AMR][1000 genomes]
rs4560339	1.00[AMR][1000 genomes]
rs4596189	1.00[AMR][1000 genomes]
rs4955477	1.00[AMR][1000 genomes]
rs4955535	1.00[AMR][1000 genomes]
rs4955549	1.00[AMR][1000 genomes]
rs6439485	1.00[AMR][1000 genomes]
rs6439486	1.00[AMR][1000 genomes]
rs6439490	1.00[AMR][1000 genomes]
rs6776208	1.00[AMR][1000 genomes]
rs6777283	1.00[AMR][1000 genomes]
rs6805568	1.00[AMR][1000 genomes]
rs6805896	1.00[AMR][1000 genomes]
rs6806608	1.00[AMR][1000 genomes]
rs7356009	1.00[AMR][1000 genomes]
rs7372999	1.00[AMR][1000 genomes]
rs7609638	1.00[AMR][1000 genomes]
rs7609727	1.00[AMR][1000 genomes]
rs7633582	1.00[AMR][1000 genomes]
rs9289473	1.00[AMR][1000 genomes]
rs9289477	1.00[AMR][1000 genomes]
rs9844020	1.00[AMR][1000 genomes]
rs9870217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134328200-134368200	Weak transcription	Brain Angular Gyrus	brain
2	chr3:134358200-134368600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:134358400-134368600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:134358400-134368600	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:134358400-134368600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:134358600-134368600	Weak transcription	Brain Substantia Nigra	brain
7	chr3:134359600-134366600	Enhancers	Fetal Heart	heart
8	chr3:134360200-134367400	Genic enhancers	Fetal Muscle Leg	muscle
9	chr3:134360800-134366000	Enhancers	Left Ventricle	heart
10	chr3:134360800-134367600	Enhancers	Right Ventricle	heart
11	chr3:134361600-134369600	Weak transcription	Pancreas	Pancrea
12	chr3:134362200-134368800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:134363200-134366600	Enhancers	Psoas Muscle	Psoas
14	chr3:134363400-134369200	Weak transcription	Adipose Nuclei	Adipose
15	chr3:134363800-134369400	Weak transcription	Ovary	ovary
16	chr3:134364400-134366600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:134364400-134366800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:134364400-134366800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:134364400-134368600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:134364400-134369000	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:134364400-134369000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:134364400-134369200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:134364400-134369200	Weak transcription	Spleen	Spleen
24	chr3:134364400-134369400	Weak transcription	HSMMtube	muscle
25	chr3:134364800-134367200	Genic enhancers	Fetal Muscle Trunk	muscle
26	chr3:134364800-134367400	Strong transcription	Osteobl	bone
27	chr3:134365000-134369400	Weak transcription	Right Atrium	heart
28	chr3:134365600-134367800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links