Variant report

Variant	rs6440699
Chromosome Location	chr3:150529621-150529622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1373418	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs41354246	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6440698	0.82[AMR][1000 genomes]
rs6768306	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6792791	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73003787	0.80[AMR][1000 genomes]
rs73003792	0.80[AMR][1000 genomes]
rs73005813	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73005814	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7628776	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150524800-150530000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:150524800-150530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:150525000-150529800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:150525200-150529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:150525200-150530000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:150525200-150530200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:150526000-150529800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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