Variant report

Variant	rs73003787
Chromosome Location	chr3:150511287-150511288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150479804..150481721-chr3:150510998..150512588,2	K562	blood:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1373418	0.87[EUR][1000 genomes]
rs1444197	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16862842	0.93[EUR][1000 genomes]
rs16862858	0.82[EUR][1000 genomes]
rs1814463	0.87[EUR][1000 genomes]
rs1814464	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1838337	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1915365	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2014279	0.87[EUR][1000 genomes]
rs2018246	0.87[EUR][1000 genomes]
rs2869479	0.82[EUR][1000 genomes]
rs34348847	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34771595	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3851356	0.87[EUR][1000 genomes]
rs41354246	0.87[EUR][1000 genomes]
rs41372346	0.93[EUR][1000 genomes]
rs41454348	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57278175	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57869178	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58403524	0.93[EUR][1000 genomes]
rs58418105	0.85[EUR][1000 genomes]
rs60259684	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60523415	0.93[EUR][1000 genomes]
rs6440696	0.87[EUR][1000 genomes]
rs6440697	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6440698	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6440699	0.80[AMR][1000 genomes]
rs6769917	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6777178	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6795396	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6803830	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805481	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6806197	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71764080	0.93[EUR][1000 genomes]
rs72993403	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73003792	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73005814	0.82[EUR][1000 genomes]
rs73010941	0.87[EUR][1000 genomes]
rs73010947	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73010956	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73010964	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73010965	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73010967	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73869297	1.00[EUR][1000 genomes]
rs7617507	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7628481	1.00[EUR][1000 genomes]
rs7628776	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150509600-150511600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:150509800-150518400	Weak transcription	Aorta	Aorta
3	chr3:150510200-150511600	Weak transcription	Placenta	Placenta
4	chr3:150510200-150511800	Weak transcription	HSMMtube	muscle

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